quality control according to 'nCount_RNA', 'nFeature_RNA', 'percent.mt', 'CellsPerGene'

quality control according to 'nCount_RNA', 'nFeature_RNA', 'percent.mt', 'CellsPerGene'

QCfun(
  SeuratObj,
  minCountsPerCell = NULL,
  maxCountsPerCell = NULL,
  minFeaturesPerCell = NULL,
  maxFeaturesPerCell = NULL,
  maxPercent.mt = NULL,
  plot = FALSE
)

Arguments

SeuratObj	Seurat object
minCountsPerCell	minCountsPerCell
maxCountsPerCell	maxCountsPerCell
minFeaturesPerCell	minFeaturesPerCell
maxFeaturesPerCell	maxFeaturesPerCell
maxPercent.mt	maxPercent.mt
plot	whether to plot quality control results

Value

Seurat object

Examples

if (FALSE) {
SeuratObj <- QCfun(SeuratObj)
}