basic single cell analysis with Seurat

Source: R/RunSeurat.R

basic single cell analysis with Seurat

RunSeurat(SeuratObj, nPCs = 10, resolution = 0.5, plot = FALSE)

Arguments

SeuratObj

Seurat object
nPCs

Dimensions of reduction to use as input
resolution

Value of the resolution parameter, use a value above (below) 1.0 if you want to obtain a larger (smaller) number of communities.
plot

draw plots or not. If TRUE, plots will be produced and saved in working directory.

Value

Seurat object

Examples

if (FALSE) {
SeuratObj <- RunSeurat(SeuratObj, nPCs = 10, resolution = 0.5, plot = FALSE)
}