Network showing cosine similarity between clusters

Network of cosine similarity between clusters, calculated by cluster~topic probability matrix. Width of edge shows cosine similarity between clusters, node pie shows topic probability distribution of each cluster.

cosine_network_cluster(
  ldaOut,
  layout = "circle",
  cos_sim_thresh = 0.2,
  SEED = 123,
  radius = 0.12,
  width_range = c(0.1, 0.8),
  text_size = 3
)

Arguments

ldaOut	topic modeling result
layout	network layout
cos_sim_thresh	only shows edge of cosine similarity greater than specific threshold
SEED	seed
radius	node pie radius
width_range	range of width of edges
text_size	size of labels

Value

ggplot object

Examples

if (FALSE) {
ldaOut <- SeuratObj@misc$ldaOut
cosine_network_cluster(ldaOut, layout="circle", cos_sim_thresh=0.2, SEED=123,
                       radius=0.12, width_range=c(0.1, 0.8))
cosine_network_cluster(ldaOut, layout="fr", cos_sim_thresh=0.2, SEED=123,
                       radius=0.12, width_range=c(0.1, 0.8))
}