network showing cosine similarity between reference data and query data

Network showing cosine similarity between reference data and query data, calculated with reference LDA model and transferred model.

cosine_network_cluster2(
  ldaOut,
  dist,
  a_prefix = "reference_",
  b_prefix = "query_",
  layout = "circle",
  cos_sim_thresh = 0.2,
  SEED = 123,
  radius = 0.12,
  width_range = c(0.1, 0.8),
  text_size = 3
)

Arguments

ldaOut	reference LDA model
dist	transferred model of query data
a_prefix	prefix of label of reference data
b_prefix	prefix of label of query data
layout	layout of network
cos_sim_thresh	only links with cosine similarity over threshold will be drawn
SEED	seed
radius	pie size
width_range	edge width
text_size	text size

Examples

if (FALSE) {
dist <- query_SeuratObj@misc$dist
cosine_network_cluster2(ldaOut=ref_ldaOUt, dist=dist, a_prefix="reference_", b_prefix="query_",
                        layout="fr", cos_sim_thresh=0.5, radius=0.1, text_size = 3)
cosine_network_cluster2(ldaOut=ref_ldaOUt, dist=dist, a_prefix="reference_", b_prefix="query_",
                         layout="circle", cos_sim_thresh=0.5, radius=0.05, text_size = 3)
}