Sankey diagram comparing the reference LDA model and query data

Source: R/topicModel_predict.R

After we transfer the reference LDA model to query data (transfer_LDA()), we can use this function to visualize the comparison of reference LDA model and query data.

sankey_comparison(
  ldaOut,
  dist,
  a_prefix = "reference_",
  b_prefix = "query_",
  height = 1600,
  width = 800,
  fontSize = 12
)

Arguments

ldaOut

reference LDA model
dist

transferred model of query data
a_prefix

prefix of label of reference data
b_prefix

prefix of label of query data
height

output height of sankey diagram
width

output width of sankey diagram
fontSize

font size

Examples

if (FALSE) {
dist <- query_SeuratObj@misc$dist
sankey_comparison(ldaOut=ref_ldaOUt, dist=dist, a_prefix="reference_", b_prefix="query_") %>%
          saveNetwork(file = "sankey_comparison.html")
}