Show topic activity on UMAP/TSNE cell map

Source: R/topicModel_utils.R

Show topic activity on UMAP/TSNE cell map

topicProb(SeuratObj, reduction = "umap", topic = 1, pointSize = 0.1)

Arguments

SeuratObj

Seurat object
reduction

umap or tsne
topic

which topic to show
pointSize

0.1 default.

Value

ggplot object

Examples

if (FALSE) {
topicProb(SeuratObj, reduction="umap", topic=3, pointSize=0.1)
}