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CellTopic()
- Through deconvolution and clustering information, the SpaTopic obtains CellTopics representing the spatial domains.
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CellTopic_plot()
- A drawing function that outputs a CellTopic spatial distribution plot and corresponding celltype barpolt.
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Expansion_gene_plot()
- Show smooth plots of genes as a function of buffer distance at different angles.
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FindCellTopic()
- Calculate the CellTopics to represent each domain.
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ksTest()
- Kolmogorov-Smirnov (KS) test is performed on the deconvolution results and the overall level of each cluster.
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MatrixFactorization()
- Perform matrix factorization of the KS test results.
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MetaTopic()
- Make a MetaTopic from CellTopic by celltype scores.
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Spatial_expansion()
- Applies buffering and angle calculations to divide the specified spatial domain within a Seurat object.