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Automatic annotation of Seurat object using Celaref package.

Source: R/Auto_annotation.R
AutoAnnotate_Celaref.Rd

Automatic annotation of Seurat object using Celaref package.

Usage

AutoAnnotate_Celaref(SeuratObj, counts_ref, cellinfo_ref, plot = TRUE)

Arguments

SeuratObj

Seurat object to annotate

counts_ref

counts matrix of reference data

cellinfo_ref

data frame of cell information of reference data, the first column as cell ID, the second column as cluster ("Cluster" as column name)

plot

produce plots or not

Value

data frame of prediction result