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Automatic annotation of Seurat object using CellAssign package.

Source: R/Auto_annotation.R
AutoAnnotate_CellAssign.Rd

Automatic annotation of Seurat object using CellAssign package.

Usage

AutoAnnotate_CellAssign(SeuratObj, markerDF)

Arguments

SeuratObj

Seurat object to annotate

markerDF

A data frame with two columns (celltype, gene), containing the markers of each cell type.

Value

Seurat object. The predicted cell type label is stored in SeuratObj$predicted_label.