Run CytoTRACE on Seurat object
Usage
RunCytoTRACE(
SeuratObj,
keep_orig_reduction = TRUE,
reduction_method = "umap",
ncores = 1,
save_plot = TRUE,
return_object = TRUE
)Arguments
- SeuratObj
A Seurat object
- keep_orig_reduction
keep original reduction dimension of Seurat object.
- reduction_method
reduction method, umap as default. Only works when
keep_orig_reduction = TRUE.- ncores
the number of cores to utilize.
- save_plot
save plots to pdf or not.
- return_object
return CytoTRACE result or not.