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Run slingshot on Seurat object

Source: R/RunSlingshot.R
RunSlingshot.Rd

Run slingshot on Seurat object

Usage

RunSlingshot(
  SeuratObj,
  clusterlabel = "seurat_clusters",
  reduction = "UMAP",
  dynamic_genes = FALSE,
  save_plot = TRUE,
  return_object = TRUE
)

Arguments

SeuratObj

A Seurat object

clusterlabel

cluster labels

reduction

reduction

dynamic_genes

whether to identify dynamic genes across pseudotime

save_plot

save plots to pdf or not.

return_object

return object or not.

Value

if parameter return_object = TRUE, SingleCellExperiment object and dynamic genes will be returned.