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Heatmaps showing cluster enrichment and TF expression of each regulon in each cluster.

Source: R/MINIEX_visualization.R
enrich_exp_hmp.Rd

Heatmaps showing cluster enrichment and TF expression of each regulon in each cluster.

Usage

enrich_exp_hmp(
  SeuratObj,
  MINIEXouputPath,
  group.by = "seurat_clusters",
  assay = "SCT"
)

Arguments

SeuratObj

Seurat object

MINIEXouputPath

output path of MINI-EX.

group.by

Name of the metadata column to group cells by (for example, seurat_clusters)

assay

assay to calculate mean expression

Examples

if (FALSE) {
enrich_exp_hmp(SeuratObj, MINIEXouputPath="regulons_output")
}