Generate a marker file to run Garnett.
Usage
get_marker_file(markerDF, SeuratObj, file = "./markers.txt")
Arguments
- markerDF
A data frame with two columns (celltype, gene), containing the markers of each cell type.
- SeuratObj
The Seurat object that you going to annotate using Garnett.
- file
Path to the marker file to be generated. Default is "./markers.txt".
Value
None, marker file is written to file parameter location.