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Heatmaps showing mean regulon activity and TF expression of each cluster.

Source: R/GRN_visualization.R
ras_exp_hmp.Rd

Heatmaps showing mean regulon activity and TF expression of each cluster.

Usage

ras_exp_hmp(SeuratObj, rasMat, group.by = "seurat_clusters", assay = "SCT")

Arguments

SeuratObj

Seurat object

rasMat

matrix of regulon activity score(RAS) in each cell

group.by

Name of the metadata column to group cells by (for example, seurat_clusters)

assay

assay to calculate mean expression